Scaffold Ga0209414_1021545

Overview

Basic Information

• Taxon OID: 3300023301
• Scaffold ID: Ga0209414_1021545
• Source Dataset Name: Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2121
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002402	Metagenome	563	Y
F014810	Metagenome	260	Y
F094668	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209414_10215452	F094668	GGA	MAVYANVDSDFTVASTSGGDASFTVTLLAGGSLVGPYKNITGLTGNILCFKSDEL
Ga0209414_10215454	F002402	N/A	MYYKGTKTKCEAYNTKVTLGENYQGSTTSWANVTSNQNGQGFAILKHENYKSEMTLIDKIPNSWYNNLEL
Ga0209414_10215455	F014810	N/A	MSVLSDNFGIILSSTLGALGTLFGFLKGKKSRESNANIEIGKAYELMARQNNAFIITMTEKIEKQTTKIEHLEFEVIGLRNENKLLLTELKKYRKK