Scaffold Ga0209414_1014166

Overview

Basic Information

• Taxon OID: 3300023301
• Scaffold ID: Ga0209414_1014166
• Source Dataset Name: Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2801
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Salegentibacter → unclassified Salegentibacter → Salegentibacter sp. BDJ18 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008854	Metagenome	327	Y
F011458	Metagenome	291	Y
F027681	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209414_10141662	F027681	N/A	MRNWIIFTFFLYRGFKIFGRTFSRVRAATPTVIAFFFGVISQKIIGSEHWLVLLIEWIPFAICIFLGFYYYKYKPVKYDELLDWQQQFKYLSKPDQIGTKDETFPDGIYYKSELKRLSKTHLAYFGKAKNVDVLKGLAPTIVTAIGSIIYVLLQ
Ga0209414_10141664	F008854	N/A	MSIPISKKDLLRVIDEVRQEVCDKEFKTLTYECHNGDRFSNNYEINEYGNTRFKFEITI
Ga0209414_10141665	F011458	N/A	MKHLIILIALISFSVNAQNKITLIVGFDKQEITFSDSLTYRSTKEFYWWSNRSRVDFETDLPKFQAVKVVAMPRAKMYHFDKGVIYINSYLNDYPNFKRIVIFHSILHEIYGVPKTKGSSLDVMNEHFYVTDRFEEKYKYRRTHFKDIKMAMAAFEIHKPLRTKN