Scaffold Ga0209414_1004445

Overview

Basic Information

• Taxon OID: 3300023301
• Scaffold ID: Ga0209414_1004445
• Source Dataset Name: Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5946
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045454	Metagenome	153	Y
F076655	Metagenome / Metatranscriptome	118	N
F102169	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209414_100444510	F102169	GGA	MAGVINNTQRQYNLKTIGKSGNRVTVRIVPGFNVVDDKHWEEFTGKDGKTVDTYVAQLKEEGKLAFGKIQDDQELESEVSKSKSKSQAKPKTQK
Ga0209414_10044455	F076655	GGAG	MLLEEAINKLVRDTVNLVLETPGYTIKAKQEDAPRPVGAYAVVDFLASESLGWEQRVFKDNIDNLDVTEYISGLRNITMSINFYRAKAMDNSRKVRIGLVRESIQSLFSSAGVGLVSRSEVRDIDSPTDDGWEERSQFDLVLNTVATDQDIVRSIQVIDIAGEFQYRGLKYNFNIEV
Ga0209414_10044459	F045454	GGA	VADNDQESRLWRVLETIEKRLSGIEDKLEKVIRLEERVTNHEQVIVRFGKRLDSGDERMMRLELWQADQNPDMILTALKGNTDNIELVKIEVDALTSASNINIGRSDITKTILKWVAGILAAVIIYQATRGM