Scaffold Ga0209414_1004037

Overview

Basic Information

• Taxon OID: 3300023301
• Scaffold ID: Ga0209414_1004037
• Source Dataset Name: Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6303
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008607	Metagenome	330	Y
F019308	Metagenome	230	N
F068570	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209414_10040373	F008607	N/A	MADAIFAKVAEFMTDTVIFSAKESVDKYNKPTFSGTPTSVTGRLIFDTVKSRDVQGIEVVDVGRFITLGPSLTINIGHKMVIGSNTFTINAVDNISDENGAHHTVIRFGR
Ga0209414_10040374	F019308	GGCGG	MAKTFTFTLEGDFTLQEALKRAQTDSPKAVAQAIWEEANLIFARSQTLVPVDTGVLRGSGGVSAPQTGQNGTYVDVFYGGPAAPYALFVHEIIGNYHNPPTQAKYLEQPFMEALKGIQNNIARRIISIINARG
Ga0209414_10040376	F068570	GAG	MEETQLPMSSKDAGSVTVSFLKAQRARGASPVPVVNLKTNQDNFLSELDALSTGDSRSQLGCTVGRITNSLDESIRTKFKEALVNPNVNSARLVELLAKYDITVGSDVMRRHRRRLNGKDGCKCPRES