Scaffold Ga0209414_1003608

Overview

Basic Information

• Taxon OID: 3300023301
• Scaffold ID: Ga0209414_1003608
• Source Dataset Name: Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6745
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001731	Metagenome	644	Y
F003182	Metagenome / Metatranscriptome	502	Y
F032155	Metagenome / Metatranscriptome	180	Y
F098193	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209414_100360813	F000403	AGGAG	MSDYIEVINPRTKICTLLQNGEPVAVYKMEQCDKCSSLSRLDEFGYQKGYGNNDRIIWFCGGCR
Ga0209414_100360815	F003182	AGGAG	MHILLFDCSRCKKAFGKASQKHGLTKGNELTKNEWFSQCFGCQAFGIKIVDEARIKELSY
Ga0209414_10036082	F001731	GGTGG	MSIFNPVWRVTINGVQYQTVILANLTITSGRTNIYEQANAGYINLEIINLDQALISIEINNSITVELQDSTSTFVPIFGGSIVDIGVSVAEVGSVGFAQRVSIIALGALARLPKALTDGVLTQDFDGDQIESILREVLFGSWQEVPGALTWATYDPATQWQTAENSGLGQIDQPGNYELTARSSDVTDVYSLVSALATSGLGYIYEDAIGRISYADSTHRTSYLAANGYVDLSANHAIANGLKIQSRSGDVRNTITLNYGSSSQVSATDSASVGVYGQLAQIFQTTIVGEVDAQDQANFYLDLRAYPRFNFNDIVYELTNPELDNGDRDSLINVFMGMPVNVADLPLNMNSGDYLGFVEGWTFKARYNQVSVSLNLSPISFSLQAMRWNDVPITEQWSTINPTLDWINATIVA
Ga0209414_10036084	F098193	GGAG	MIKPIVRIHNSQTDEIIDREMNAEEFAQYEENQAAELLRQAEAEASATQKAALLARLGITADEAKLLIG
Ga0209414_10036088	F032155	N/A	MSVNEWTAVGGLALAMLAAIYSSMRFIIRSVMRELAPNSGSSIKDQVTRIEARLDYLYTQLIDKNQG