Scaffold Ga0209414

Basic Information
Taxon OID	3300023301 Open in IMG/M
Scaffold ID	Ga0209414_1002207 Open in IMG/M
Source Dataset Name	Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023301 Open in IMG/M

Scaffold ID

Ga0209414_1002207 Open in IMG/M

Source Dataset Name

Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8911
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (81.82%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8911

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (81.82%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location Name	Lake Vida, Antarctica
Coordinates	Lat. (^o)	-77.38861	Long. (^o)	161.931111	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Vida, Antarctica

Coordinates

Lat. (^o)

-77.38861

Long. (^o)

161.931111

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002703	Metagenome	536	Y
F008667	Metagenome	330	N
F019583	Metagenome	229	Y
F034413	Metagenome	175	Y
F048679	Metagenome	148	Y
F104016	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209414_10022071	F034413	N/A	QVMAGTADYNFLPAALQSAIRLPIYNRACSVLAEPNKEARRAKLDSEAESVRALVETEALRIYKLRRKGLQ
Ga0209414_100220712	F019583	GAGG	MNDHHTKTLDHYQGLVDQLADQDAALEKLRVDFAEKLMQEYSEDNHKLSWLVAEWLGHSSSQLEGYVLSSIKDPDFDMGEVWRDWLTDRFDDMAKSMDSKQIDAFQEEYF
Ga0209414_100220717	F104016	AGG	MIDAMDSIPGRVNDLEKDTHNIKYRLKLLEELPPKVSELERAFSVMDSNLMYIKQTGIDTKIVVDELNNSYKTLVGELKGVPRALNMVAGLIAIGGIGVSIVLWIQ
Ga0209414_10022074	F008667	AGCAGG	MNPGSADFRRANLNPSYQCQPRAEYVQRAVEMAPRGSQLAKKLTVHDVQVMRLNVHGRTDKQQAKVFSVSESMVYKIRKGERWGLVR
Ga0209414_10022076	F002703	AGGA	MSTASLADKLAHAKRESKSLKAQLEASRIAYDDLLAAFDKSVYLPQAIGRRNMFKRAREKTSG
Ga0209414_10022079	F048679	GGA	MRLKVYLLLAVCHYLKIEQRQLQNASGLGANTMSLWKVNKRHPTVESFYRAQCALVELSGLPEEYKNLEIEAVARIVIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209414_1002207

Overview

Ecosystem & Geography

Associated Families

Sequences