Scaffold Ga0209414_1000657

Overview

Basic Information

• Taxon OID: 3300023301
• Scaffold ID: Ga0209414_1000657
• Source Dataset Name: Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16777
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (87.23%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000808	Metagenome / Metatranscriptome	882	Y
F003965	Metagenome / Metatranscriptome	459	Y
F006385	Metagenome / Metatranscriptome	374	Y
F011386	Metagenome / Metatranscriptome	291	Y
F014129	Metagenome / Metatranscriptome	265	Y
F018929	Metagenome / Metatranscriptome	232	Y
F034573	Metagenome	174	Y
F063707	Metagenome / Metatranscriptome	129	Y
F083720	Metagenome / Metatranscriptome	112	Y
F099311	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209414_100065713	F063707	N/A	MTLKKQGMSNTMPKCLDCGNDTKFWYLEVSHKLGIYDSKGELEDVEDDYYDDVETSSGSCGKCESKNIEGKL
Ga0209414_100065727	F000808	GGA	MEYTYSLTTSYDGELFHTMKVSDMLTAAEAWEKCVDFGDAKEYATYNLSDPTGKMYSKTFYRNGNVSIK
Ga0209414_100065730	F006385	AGGAG	VILDTGTLIGICIALTGSIIAMVSFYLFNVQLQKEIHRLQIALRTERLKK
Ga0209414_100065734	F083720	GAG	MSANIYTIKTLLVGKKYHSKTLQGEILSAIIHPKAVWYKGCETYLVEIEPYSGFNTWGRKTYRTIAVKVGE
Ga0209414_100065740	F003965	AGG	MITLEINKCLEHNPMKSAISMVGDDQFTFCQDCEQNIERWYNDTDSDCLPMWTDWKVSN
Ga0209414_100065742	F000447	N/A	MGYIEIFRLDEQGAGWVDLSEATPSELLDLEIGLLQEGVL
Ga0209414_100065743	F014129	AGGTGG	MTTQIKEITLENVSPSEANRIVCVFCSDYSSEYFCVNCNEYKGLMTLGEWLAYTEESWVS
Ga0209414_100065746	F011386	GGAGG	MKVTLTSMQGNTRDINLMTKEEVLDFIELYKSTLHKSERVRVTCDLLGINGYLQGVA
Ga0209414_10006575	F018929	N/A	MQRSKWLNAMTNEELSKALNQESYRVWDMAKVIKNQDYHDGVVKGIKMAAKYVAKLDTNQ
Ga0209414_10006578	F034573	AGGAG	MYRISKAVITSKEEKSAIAIGKILSDFHLDLEKVGYYLARATPYLVYRRALEVLESAQFQQDTVEQKRIEYNYDRLF
Ga0209414_10006579	F099311	AGGA	MAAKKNKLKTIPYLETWDTRYGKSQRIVYRKGGKFVDNTSLTALKRGERVISR