Scaffold Ga0209414_1000102

Overview

Basic Information

• Taxon OID: 3300023301
• Scaffold ID: Ga0209414_1000102
• Source Dataset Name: Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36233
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (91.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011838	Metagenome / Metatranscriptome	286	Y
F041722	Metagenome / Metatranscriptome	159	Y
F046330	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209414_100010217	F041722	AGGAG	MGMQTDIKATTPLTTTGSFLDQGANALARVRIKGIYVVCGVSAGSVVIANGNGGTTLLTLNTPTAADAGYAYIILPGEGILAERAVYGTVTNATSTVVFYG
Ga0209414_100010224	F011838	GAGG	MNIDLLRHLSNKVQEELKVIEADMAMGNAADYGAYKYACGIYRGLLVANNIIAEIAQRMEQDDD
Ga0209414_10001026	F046330	AGGAG	MAKGGKTNEQMLELGRNLAKVANQKKSVHKVPTNEVKVVKNG