Scaffold Ga0209414_1000077

Overview

Basic Information

• Taxon OID: 3300023301
• Scaffold ID: Ga0209414_1000077
• Source Dataset Name: Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40952
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (14.52%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012129	Metagenome / Metatranscriptome	283	Y
F034246	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209414_100007715	F012129	N/A	MEKDPLDLLKQSLNQLLQADTSIKRKNKKIFDQKKDLFINLVNQMEYAVTKSYTLKRDYSIDLFDYEENYYQIIDSLIHLAFGKEIYELLSFYIYERNNEDGSQNGLYMGEDGEEIPLKNAEDLWLTVIKIKPNIFDEKR
Ga0209414_100007721	F034246	AGAAG	MQGIVLQGPTDYYKEVADHYSKFDNVVWAIWDDEYQFQIDYIKSKGIEVILVKKPLYPGYLNVNLQVKSTFEGIKALEGKVDEILKVRSDTIISNLDHLLDSLKGRQLSFMATCKEGVRKDLEYHLIYHHTSHDYPSDNIIYGKIEDMLLMFDFQIDEMLPIPPEALIIWNYMENKNMEFKLNYQNLIDNDISFFTDICLDKEVGVYWLKMAVNLVDWYKDKTIYDW