Scaffold Ga0256702_10052701

Overview

Basic Information

• Taxon OID: 3300023300
• Scaffold ID: Ga0256702_10052701
• Source Dataset Name: Food waste microbial community from Durham, Ontario, Canada. Combined Assembly of Gp0238881, Gp0242100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Toronto
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1036
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location

• Location Name: Durham, Ontario, Canada
• Coordinates
  • Lat. (^o): 44.1763
  • Long. (^o): -80.8185

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009131	Metagenome / Metatranscriptome	322	Y
F099086	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256702_100527012	F099086	AGCAG	VSCPSDPAEASPGPQPKGDDEIKKMAEAIMDEVVDRLLNEAAEVVLREN
Ga0256702_100527013	F009131	N/A	EDLRKQLARAWEERILEETRRELSDQWADHLEATVEELRSSKKRCFNKSIECVKKLKASFARVGAFSSEENFIRGNPEGPIEWIDHEAEAFEEILNSRGDICAFSGARGIATILEKKGCEHVKILAQSETALSFEDAKDPSAEASIIGGKFFTDIWDNGGREMAGEIIQRSEKGIHDAREVAKAAEKSTEPEGQLGINL