NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256702_10037421

Scaffold Ga0256702_10037421


Overview

Basic Information
Taxon OID3300023300 Open in IMG/M
Scaffold IDGa0256702_10037421 Open in IMG/M
Source Dataset NameFood waste microbial community from Durham, Ontario, Canada. Combined Assembly of Gp0238881, Gp0242100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Toronto
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)630
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location NameDurham, Ontario, Canada
CoordinatesLat. (o)44.1763Long. (o)-80.8185Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014592Metagenome / Metatranscriptome261Y
F099086Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0256702_100374211F099086AGGLFAICNSKVAVSCPSSDPTEVSPGARPKGDDEIKKMAEAIMDEVVDRLLNEAAEVVLRED
Ga0256702_100374212F014592N/AAFSGARGIATLLEKEGCEHVKILAQSEAALSFEDTKDTSAEASIIGGKFFTDIWDNGGRELAGEIIRRSEKGIHDAREVAEAAEKSAGAEGQLGIK

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