Scaffold Ga0222664_1000286

Overview

Basic Information

• Taxon OID: 3300023296
• Scaffold ID: Ga0222664_1000286
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #604
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34814
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (59.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017161	Metagenome / Metatranscriptome	242	Y
F020035	Metagenome	226	N
F087740	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222664_100028610	F017161	N/A	MQKVGKPKDWVLFPYDATHEMSVKIDFSGNIQLNNGKKGTILASKGTSKDGNTKFVRLFTQTGVLFKGDDGKFTGDMTNVEIGGKKALIGWLNDKSDKPNISGYANEPGVKPESKDQAPF
Ga0222664_100028614	F020035	N/A	MKIKLEPFEVQMAAEVANRRFIENIKMGKNFSYGFKGTVEQTLSLGIMGASAELAFAKATNTYFNGSYSDQYSRYTDSDMQNQIEIRSQKRKDYNFLLIRPGEKKARYVLIIDEGNFEYSLIGWFPFISDMPQRLTNFGHINRPPAYKVDIKELYPIADLKT
Ga0222664_10002866	F087740	N/A	MDIGETLNLKTKKTFQLLSILKKCREKGKFDLSMKLISKYKIDKTKLEESYYD