NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222670_1027464

Scaffold Ga0222670_1027464


Overview

Basic Information
Taxon OID3300023294 Open in IMG/M
Scaffold IDGa0222670_1027464 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #732
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)991
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010776Metagenome / Metatranscriptome299Y
F040002Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
Ga0222670_10274642F040002AGGAMNIKQTVIFAFIVAIIGFGFKDFCPNYKQLEKSRTLIEKVADGKVYEWATTKKCELSIVSIDGVYLERYMKENFSKIKDDEEMKQLEKMFK
Ga0222670_10274643F010776N/AMILARLKLNTKLVEVDEFVTKFSKKYKNNDLRVDVKLTDTECLIYLYRKLH

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