Scaffold Ga0222670_1019357

Overview

Basic Information

• Taxon OID: 3300023294
• Scaffold ID: Ga0222670_1019357
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #732
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1284
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025595	Metagenome / Metatranscriptome	201	N
F060352	Metagenome / Metatranscriptome	133	N
F076488	Metagenome / Metatranscriptome	118	N
F095503	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222670_10193571	F060352	GGAGG	MKKVSKLKKDSVFICSVCAEGFVHKKPDTLVGKLGPIPVQFCKPCFKKVMKHD
Ga0222670_10193574	F025595	AGGAGG	MTVDINGLSTKLEVLTSIKENIQDGKTDTAIDMVNQMIEMEPAPGQKRPVADALDHHQIMQKGIVR
Ga0222670_10193575	F076488	AGGAG	MRTEYDEVKEILVKHDVDLDGDIDYMMETIVYGEPLFQELFEYFIGDMPYDVAKGRADLMSDEWILDRVQALGLIKEEA
Ga0222670_10193576	F095503	N/A	VLVAGGFVAGIKILTFLNMPKEIVFPVMWIAFIVLMAYKWYSMKYDWSKEDKAYDRASKKYTNKLKELK