Scaffold Ga0255813_11824830

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255813_11824830

Scaffold Ga0255813_11824830

Overview

Basic Information
Taxon OID	3300023280 Open in IMG/M
Scaffold ID	Ga0255813_11824830 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0238881, Gp0242115
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Toronto
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	564
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location Name	Durham, Ontario, Canada
Coordinates	Lat. (^o)	44.1763	Long. (^o)	-80.8185	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018877	Metagenome / Metatranscriptome	232	Y
F099086	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255813_118248301	F018877	N/A	SQISVKNFPPIKDPSAEASIIGGKFFTDIWDNGGREMAGEIIRRSEKGIHDAREVAEAAKKSAEAEGQLGIN
Ga0255813_118248302	F099086	AGG	MICNSKVAVSCPSSDPTEVSPGARPRGDDEIKKMAEAIMDEVVDRLLNEAAEVVLRED

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