Scaffold Ga0255813_11710671

Overview

Basic Information

• Taxon OID: 3300023280
• Scaffold ID: Ga0255813_11710671
• Source Dataset Name: Combined Assembly of Gp0238881, Gp0242115
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Toronto
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1232
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location

• Location Name: Durham, Ontario, Canada
• Coordinates
  • Lat. (^o): 44.1763
  • Long. (^o): -80.8185

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079404	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255813_117106711	F079404	N/A	IGLPEFSNAPLKKRLSWRPRSPRREDDSSVHYLMGRIRLLAHSGLTMIVVMATCIMRGMQPLQYSGHPMWDFNGDDNATRHGRKGPGSADDLVKILSGLYKGEKEDFLRTNPLNRFSMNNPRSWVSGRMHI