Scaffold Ga0247760_1000029

Overview

Basic Information

• Taxon OID: 3300023272
• Scaffold ID: Ga0247760_1000029
• Source Dataset Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L171-409R-4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 121782
• Total Scaffold Genes: 110
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 81 (73.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046467	Metagenome / Metatranscriptome	151	N
F065927	Metagenome	127	Y
F076755	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247760_100002967	F076755	GAG	MHAVVKGMVQVHSVTYRIVRVSAGHYDVVRLLDDVRVGMFSLGTRREPIIEGDAPEVIREVARAALQGGRTTWAPRRLLA
Ga0247760_10000297	F065927	GAGG	MAPNTRPVLKSIESSPVHPFQALDHFVTSGGMRVSYYALALDQVPVDFFADPDGTWSYELLSRAAGFASHSGVAIGALKAEFNGHPEGAAVVTLNALTRPYVAIVECPIAYEYLEPSESSASSAA
Ga0247760_10000298	F046467	N/A	VSDLRDPDRDPDHLLAPERLIELENAAEPARQRLSELPAPALALVQAWLAAELSVARERALEVADFEFAECVCEMEQRLRFPGSFMRDAQASLRIQAVLGARAQFRVIQGGG