NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247789_1037527

Scaffold Ga0247789_1037527


Overview

Basic Information
Taxon OID3300023266 Open in IMG/M
Scaffold IDGa0247789_1037527 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)864
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027528Metagenome / Metatranscriptome194Y
F095446Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0247789_10375271F095446N/AQLLNLAKLAKKYGAITTLPNMTKFVPSFVEGGRTLQATVGQGAFLTLRLDGRIVTRLRAGKYTVAVADRSTRDNFHLVGGSVNRATNVAKRQNATWILDLKKGVYRYSSDGSTKRKAVFRVA
Ga0247789_10375273F027528N/AELTPHFEGRREVRDTLRAAVRARSHSVTLEREVAERFVRRLVAFDLPTVLLRTKLLFAIQDADQQASEQQPATADGARAA

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