Scaffold Ga0224535_1005008

Overview

Basic Information

• Taxon OID: 3300023258
• Scaffold ID: Ga0224535_1005008
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 30-34
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3410
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0469
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F012316	Metagenome	281	Y
F104257	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224535_10050081	F005296	GGAG	MATWLLWLLPSFEAGFWSALLAGKLRGQGKSRELLVYGSRSRTHLPLIDKRLRKAAGTPTKSQASLVRHTAAFIRWLANTRAIEHVLLIGLKRS
Ga0224535_10050082	F012316	GAGG	MSTTIIGQPAGPMHLLGKVLEGFRKMGTRSVSKFNTWRKRLDQNSLERALAQIIETANGHRAKGLPKGSPAYCVLRDTADAKIHAFASKWSVDIAIIEAEAPALADLNSLCVPDKQIPAGLKLLVGLFGTILSLLLLGTASGLIHAGHDWVMRIAVR
Ga0224535_10050086	F104257	N/A	GDYILVETKLCRALATLRLRRDQMIEDHRQLEHLIKRPLATALLDRYPVDDAILRIIAELTYWWRAQFDSARKQFGGAIPPETFKRAAYGYSSLMEVELPDGKIELEEIHQPGLIDLYTNQLSVSGTVFSVSGNPWSVETRRKIGIHLANNRYTDDREPRLDDAGFTMSVSDGILINEILHDILDAEEEMGLTGQVEFIDLNGYAHKKLANGDEMLVKAEGGHIFHMSNGRELSQRPNATIPDGCYMMSDQGIIRVADAVPELKSNFKSQHVASLTACGFEFDEDPGL