Scaffold Ga0224547_1005820

Overview

Basic Information

• Taxon OID: 3300023255
• Scaffold ID: Ga0224547_1005820
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1530
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0472
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003631	Metagenome / Metatranscriptome	476	Y
F013912	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224547_10058202	F003631	N/A	MMELLLNIAWVLLALPAYWLWRRNAEDTRGCGLKPLQCLLALGCVLVLLFPVISATDDLHAMRAEMEDSATSKRAVRQAGGEKNSAWVNRLQAPLAAVASSGWLALPEVRRYEFVVSSVRPLARQSVLHAGRAPPFFLLG
Ga0224547_10058203	F013912	N/A	EAIAVAWKVPAHVNVSRIEGSVEVSNSTADDMNLTFDVKAVAENGRATEIGYQHYVLTKGTIGMALPFGETLPHGAYVVYVNVVGEVPQRNAIYRQQLQTARALQVVPGP