Scaffold Ga0224544_1008652

Overview

Basic Information

• Taxon OID: 3300023250
• Scaffold ID: Ga0224544_1008652
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1376
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3533
  • Long. (^o): 19.0471
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001432	Metagenome / Metatranscriptome	696	Y
F015081	Metagenome	257	Y
F071728	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224544_10086521	F001432	AGGAGG	MSLQKEFIRDGKRRIIGSVTSGFSDESAVVRDDDNQLSGRTSERYDTTRDDHGNLVSINSADPGLLIGRKK
Ga0224544_10086522	F015081	AGG	MNPYSGDKEIGSEDLIQEQRSIARSKNPFERVVGSLCIGASLKEQLVRLPNSAISRLLTDQIWSQLNLLEPESVIVEIATERLVEKREASLICPECGSEFWRADE
Ga0224544_10086523	F071728	GGAGG	MNKPHRADVRQVDLKVNGITFESVRLRRSSGANDFDIVIDDPHVGRFALTSAVPNLELQDEDSGWRQVTLDELKKILADDGELAEAAEQPQASGTSERESFNRRVAEGEHIMNAEIALFRAGIPFLQLPFQQNKFSSNLFMVMS