Scaffold Ga0222655_1007332

Overview

Basic Information

• Taxon OID: 3300023245
• Scaffold ID: Ga0222655_1007332
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #423
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2418
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009178	Metagenome	322	Y
F013705	Metagenome	269	N
F035481	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222655_10073321	F009178	N/A	RICENINGYLETQVYYFYTKKDAIRKFREHKKAIINK
Ga0222655_10073324	F035481	N/A	MKKYKIIKFRKSGTKKTLEKNLTLDEAKRYCSRPDTKGKNWFCGFTEQ
Ga0222655_10073326	F013705	AGG	MPNKLQNKINELLELEKLTNIKEQYDQHLKTKGLYEQFDFVPLPQDIMDGANTDWEND