Scaffold Ga0222708_1004335

Overview

Basic Information

• Taxon OID: 3300023242
• Scaffold ID: Ga0222708_1004335
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1576
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2995
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025663	Metagenome	200	Y
F054612	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222708_10043352	F025663	AGGA	MDCFDSVSAAEAGAWLHLTNLRTDAPAYVTGKDGASDLSKPMRINLIGMDASASKAKARKRATDILKRRGGKMDFAKMSPAQIGAVIDEGQEGIIQAAVDQTIGWENLSLDGKPVEFSEEAAFAIYRKYPSILDEVTEFLKDRSNFFAQA
Ga0222708_10043353	F054612	GGA	LERANEEPDFPELPFRAYLAEWLMDAGPVMQGGMGPVALSHLEIQAWAANVGLRFEGDEAQWLQKMSGVYASELFESNGKNTPQPFRE