Scaffold Ga0222708_1001221

Overview

Basic Information

• Taxon OID: 3300023242
• Scaffold ID: Ga0222708_1001221
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1576
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6445
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008122	Metagenome	338	N
F010818	Metagenome / Metatranscriptome	298	Y
F023240	Metagenome	211	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222708_10012211	F008122	N/A	TGLDYLNAGDPAITLYAILEADAQPSTALDALARIAQGTGATYYDDPRGRIIFEDYGNRGSTTFSGIWANQVGTWADAEGTWADYPLFPPSFNLEAPGVIFSPTWAKTLTPLINDITVTYGPDLTVNQTDSASITQYGRREYRLDTGIKTLGDATTRAAGIMTAQANGLWNLGQISVLVDQLDATDTTALLELVSGDLVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVAPGFAWSEVGPGAQWFEIVTNSDLVRL
Ga0222708_100122110	F023240	GGTGG	VGDYLEGYVQALTNVLDDIDVEKCETVADVRRLIRQMLDDTDSE
Ga0222708_10012214	F010818	AGG	VDFGDVVGLVATSLAALAIMGTGLVWLIRNVVRDEIKKATQPIQPGFRNGGDSLADVSSKVDRIIEKLGL