Scaffold Ga0222634_1000569

Overview

Basic Information

• Taxon OID: 3300023235
• Scaffold ID: Ga0222634_1000569
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16175
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (69.77%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F013705	Metagenome	269	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222634_100056937	F013705	AGG	MTNKLQNKIDELIKLEELHNIKEQYRQHEKTKGLYEQIDFKPMPQEIMDQCNTDWENND
Ga0222634_10005694	F000060	AGAAG	MASKLNTEFNYRYQVIGDTAWEKIKTLKGFLEGRVRAAVLEEVGNLKDQAKLAKLKHLQNGGCGLEHEILELKAEILEGESHQPAAKEAFELNKKEIEILNKLLKELYVIAEPTRIEGYSDEEMFEANAANEFTVNIGREIQAEMIANGRPSPAKLRNAMSNPYTWNALKSIGLIPKETKILEGNINPKDKIQLIGVEDEVI