NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222709_1015095

Scaffold Ga0222709_1015095


Overview

Basic Information
Taxon OID3300023230 Open in IMG/M
Scaffold IDGa0222709_1015095 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1692
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)988
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027015Metagenome196Y
F049218Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0222709_10150951F049218N/AMSSIIVNSTHIIDKINNSTFQIDFERSVSLQDKHIALTSASLYFSWRNITSSNNTFSYTWIDDISYSVELPI
Ga0222709_10150952F027015N/AMSSILKEREVIKKNKKIIEEKDFNYDPSIKEDKVKGAFNTYMDSLVIKNFVIEQIYTRLKINKTMATQFVNKLDGNLVLILCKVIHEFIKDIQDKYVSINDYIFKTSFDELQGN

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