Scaffold Ga0224530_1002675

Overview

Basic Information

• Taxon OID: 3300023228
• Scaffold ID: Ga0224530_1002675
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T75
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7570
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030957	Metagenome	183	N
F050079	Metagenome	145	N
F066390	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224530_10026751	F050079	N/A	MIGFYQDAALQDPAVTATPKRFLLPLAGGVKPGTLYLGDPYTAAVTAPAAIGAVVVSLDQTFQFPASGSAVVYVPANGSTAAFQMVISYTGTSNNSLTGVTGITQTIGDEYLIRPSLVWRSRGNVVFFGSGSDVPNNLLVAFGVPTNPSASCR
Ga0224530_10026752	F030957	GAG	MNTSSQIQRVNSLTYADVAGLNVGLTRMQGEDSVAFLERCYLATTCRQDSTYEGEQDQVCLQLGLTQCAGISVSSTSLSMTITVCIGLVTVVLNGVTYTIPTVTMAPDDYWVWRKISDVVNDLNAITGVTATLLGPDGPALQIAKQSNQFTVPSEAITMTDQMLAHANVIESSLTFSVAPGSYVFNPQTGELIFSGTLPAGLSVAYQYTAMPYNIVCSELGLFGLVEPSLATVGVSSDNVLAYQLREVVQAVMNADPSYWAQ
Ga0224530_10026756	F066390	GGA	MAVDFRWMSRGGVLLDSTGDVSFTQSPWECLRSMANSRLKAAFDGWKSYQIGADLENVIGSTVAAELETTIQRQVESSMSQDFLPMGSFTVSTLKVGDQAYQVFVFIQNQLVASTTVSTPAST