Scaffold Ga0233412_10020225

Overview

Basic Information

• Taxon OID: 3300023210
• Scaffold ID: Ga0233412_10020225
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 2645
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6569
  • Long. (^o): -123.4875
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027845	Metagenome / Metatranscriptome	193	Y
F039623	Metagenome / Metatranscriptome	163	N
F103244	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233412_100202253	F103244	N/A	MRVEDLTSYENDKSRVTVFMETDTDGSYHFLKHVQDKKTEDGQIIRYSLEMFMAEYYLIEKFIKDNLVEDRKFFKSVMNLKASRNE
Ga0233412_100202254	F027845	N/A	MTQAEIIELVRDIHAEVDHEGVDIVYDNGVYDVDVRFTSWDCLFTIEIYSKQGDTPLELSSRTMTELFDYVVDLHTEYMRDTIEMQETRDYLDIYR
Ga0233412_100202256	F039623	N/A	MELIDSNNVISFRKFKCLVTNQIYEVVQTECTGRYIINAIDTLVRSDGLRKSFARAELRTRFFNIEGIPEKDYLIKKKKNK