NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233412_10018845

Scaffold Ga0233412_10018845


Overview

Basic Information
Taxon OID3300023210 Open in IMG/M
Scaffold IDGa0233412_10018845 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)2737
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6569Long. (o)-123.4875Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003051Metagenome / Metatranscriptome510Y
F018081Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0233412_100188453F018081AGGAGMKHFKEREFSLFNYMCDILNNFYTTNNLEHCCALESLMGGNYNNEQQKEWLKRFSDVWERVEQREVKR
Ga0233412_100188455F003051AGGAGMKTKILKNKTTIEMTNSEYDDLFKFINKLDSMLNTLHETNDLWLSDVHNLSSLRWELTKLLDAEWNPETYRYVKRGNK

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