Basic Information | |
---|---|
Taxon OID | 3300023210 Open in IMG/M |
Scaffold ID | Ga0233412_10017896 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2807 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 48.6569 | Long. (o) | -123.4875 | Alt. (m) | Depth (m) | 100 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F078539 | Metagenome | 116 | Y |
F091752 | Metagenome / Metatranscriptome | 107 | N |
F098044 | Metagenome / Metatranscriptome | 104 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0233412_100178961 | F091752 | N/A | MSQILEQQTEFLPENIQWLGLGNKYLECQYEITDNWGTKELDKKDSYDANFQNEYDFVLDNMKLRG |
Ga0233412_100178964 | F078539 | N/A | MTDIRPLSDRENFLVASVIMVVSNEMKKVDRKTRQNILQFIREERYPGVTDQDWKEVAAGIDNHKKDVFGLMVKMFHESSSKPDMFAKKSIANLDSSMKNEIDDIDFDELKDIVDKSDDPKLREYYLSMKQLKRDFDDEREEK |
Ga0233412_100178966 | F098044 | N/A | MITTSNNKQAILGVNTTYETVLTVEGIILSNPMMSELQDIGKLDKTSLLKMSLMEFLRTPVSSRKLKRLFVAAKDDDKFRAVLQGGQLE |
⦗Top⦘ |