Scaffold Ga0233412_10016128

Overview

Basic Information

• Taxon OID: 3300023210
• Scaffold ID: Ga0233412_10016128
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 2964
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6569
  • Long. (^o): -123.4875
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001802	Metagenome / Metatranscriptome	632	Y
F031927	Metagenome	181	Y
F042015	Metagenome / Metatranscriptome	159	Y
F103909	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233412_100161283	F001802	N/A	MQKIKHLKKDYVQLGNLIYRPYTVCAIPNNFGCIEFNEKEGISEWFNYKGYTYIFDSIAK
Ga0233412_100161285	F103909	AGGAG	MRDYSITRKEGEWYNAKVTDSFGVEHQNYFEHAYEANDWIMYIWEKELPPLTDAECEELLANAIHDCKQMDEEAGRRAIL
Ga0233412_100161287	F042015	N/A	MAKLDKVRAHREELKRKLFQFPTVDRPVVKTITITMMTNKWWPGYGNVSIDSDGPSGFTHFATSQKHPMEYALNTEEYKSGEYELIVK
Ga0233412_100161289	F031927	N/A	MKSIIHSIKQTDFTTIITTKSGIVKVYKFDTIEENNEFYSSQV