Basic Information | |
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Taxon OID | 3300023210 Open in IMG/M |
Scaffold ID | Ga0233412_10005289 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 5627 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (18.75%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 48.6569 | Long. (o) | -123.4875 | Alt. (m) | Depth (m) | 100 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F013081 | Metagenome / Metatranscriptome | 274 | N |
F019630 | Metagenome / Metatranscriptome | 228 | N |
F030048 | Metagenome / Metatranscriptome | 186 | N |
F043091 | Metagenome / Metatranscriptome | 157 | N |
Protein ID | Family | RBS | Sequence |
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Ga0233412_1000528910 | F013081 | AGGA | MDLIKIVKTIEPEYKNTDQCINALPNEVELQLDNEDYLIEVSLKEGVLKTNFWQGEEKYNASDDDINYIYNYLEHHLLNKIEETKVYYNAHNYNYQIWN |
Ga0233412_1000528914 | F019630 | N/A | MPKIKKKIHLKNCNHKHQRYCFKKGFIIYPVVSGNMFKVYCNRIKGNYYMKGKEFNKQQSFQAIWDLYTKIYNYEFNKVRD |
Ga0233412_1000528915 | F030048 | AGAAG | MLQEELCKNQEKIAYKSCIDSYFSSRDKKDIMEYWMQLFEQKRFCEAKGVEKALELIYIYEDINAKD |
Ga0233412_100052899 | F043091 | N/A | MELTEKKLEKISGAILSSFINLHLLEDAEKIGLFRQRVRNNIRRTISDLKEIEINYYNKIEEVDEKELGDKLTANKLIFLDWVLNKFDFNDFCKIQEVCLAYEADKERITQVTDEVLINSGAEQIDEQI |
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