 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023210 Open in IMG/M |
| Scaffold ID | Ga0233412_10001737 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11024 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (11.76%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 48.6569 | Long. (o) | -123.4875 | Alt. (m) | Depth (m) | 100 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007611 | Metagenome / Metatranscriptome | 348 | Y |
| F007827 | Metagenome | 344 | Y |
| F019252 | Metagenome / Metatranscriptome | 231 | Y |
| F029432 | Metagenome | 188 | Y |
| F042015 | Metagenome / Metatranscriptome | 159 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0233412_1000173710 | F042015 | N/A | MKVDKVRAHREELKRLLFSIPTEGRKVVKTITVEMNKNKKYWIGYGYVSVDRDGPEGFCHFASHQEHPMEYALNTKEYKSGEYQLIVK |
| Ga0233412_1000173711 | F029432 | N/A | MMKYPKIVGWSVVITMWTSCGIGLNYIQIQEQGNNEVVNTAEDMIEWIGHDLESGKIGSTIADTYIVNLEEIITDSRK |
| Ga0233412_1000173716 | F007827 | AGG | MKLTTKQKRSIKRRVDLDLGVNTPTTRIFVSKKIYTRKKKHKNERNRSKTRSLDTQ |
| Ga0233412_1000173718 | F007611 | N/A | MKKKWITVLDYETSRVYQYQVSISKHAEEFITFKGHRLSNIEWMEHQFGSIITK |
| Ga0233412_1000173724 | F019252 | N/A | MRLIDQIKPEVLDALAESKIEFSSSYRRIILSLESVNRYKQLTIDDIQTLICFLPDEFKPQGDVDMFYGDNILQEKYKL |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |