Scaffold Ga0233412_10001533

Overview

Basic Information

• Taxon OID: 3300023210
• Scaffold ID: Ga0233412_10001533
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 11885
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (20.59%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6569
  • Long. (^o): -123.4875
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025968	Metagenome / Metatranscriptome	199	Y
F033811	Metagenome / Metatranscriptome	176	N
F054452	Metagenome / Metatranscriptome	140	N
F061389	Metagenome / Metatranscriptome	132	Y
F066285	Metagenome / Metatranscriptome	127	N
F079390	Metagenome / Metatranscriptome	116	N
F084120	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233412_1000153310	F079390	N/A	MDKPKNFKELKQRLLPFINYEQSIQLNNESKVQNVGNMINSHVKILEANPGNAGYMPYYDRLVILLTILEAGWE
Ga0233412_1000153319	F025968	N/A	MIAPQEHVERVLERCFEVYPPKGKQHRRFFKSLVKNGSMPESMASMITKIIEDPNCVYIVKADGTLKILE
Ga0233412_100015333	F033811	N/A	METNIAQAFIEAIDYSHVKHIIRSNKSIKAHWGGVTPSIADLKRVITNMWARVSKHESAEDCVNGIVMIKDGKKVRIDFLYLSYSSQMEESSQHSEEGCSQDSEREIESS
Ga0233412_1000153331	F084120	N/A	MIYETIENGRCFSGEVYNAEASTAIVLEGLECEAISFSKVRKELNKEFKFCSHKVLVEYLSNLSNEY
Ga0233412_100015334	F061389	N/A	MTAILQKSFLWMTPGTIFILKTHEEREDIEIFLCEDPDEEGKEFWLSRGFVLGEFESDYKPLCWTEDLFLIV
Ga0233412_100015335	F066285	N/A	MDKKSWNVVYFNRPDVHKNLVWSDGKRYFDGFLGSDNSVYRKTSGTPVAEPNAVYWMERPLRTLDDQE
Ga0233412_100015337	F054452	N/A	MTDELKMSLLNELMFGLDVWDHEHHEEIMFLHDFGFVKVYDEDLQFTATTEEGVLELKRLIKLYFVFLN