NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233412_10000989

Scaffold Ga0233412_10000989


Overview

Basic Information
Taxon OID3300023210 Open in IMG/M
Scaffold IDGa0233412_10000989 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)15573
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6569Long. (o)-123.4875Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033251Metagenome178N
F049234Metagenome147N
F065112Metagenome128N
F069345Metagenome / Metatranscriptome124N
F082525Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0233412_1000098911F033251GGAVRTVLVLARLKPIKRMNVMADKKKRNLTSTKRAMLRWTGKEIDQLLEYKATGFKHSEIGELMGRSTKSINVKMSKIRLGVEKASNPVEDLTPFQKNLDETLFGGVSPDDKPKRKDAGKTRGPYKPRVTKLSMVSEPTPVDTFSVPKKAVYVAVVVALTIAGWYLGRVS
Ga0233412_1000098912F069345AGAAGMGRISRLSLSCGVFQMMIDCPECSHSDRKGEVEHEQFKMTSYGVYEPFGVWKTCENCSGSGEIEAD
Ga0233412_1000098914F082525AGGAMEYKINSGVPIPDVVSGKKRGRGKWQVLLSSMSEGDCVDVPLRSYNSIYVAASRLGITLMSRREADGLADEFVRIWRVSDG
Ga0233412_1000098919F065112GGAGGMFLTIEHNQSGELLCNRRLGPYEKLDIEALVSKEIDKLYCGELELEYADNVPNGCAEYYAQIRTRKHDSLCVWTTGDFFYKRETE
Ga0233412_100009893F049234AGGAMMARIELELTAIVYDNSEFECEEYKIVAFVSDWNDGEQVTEAAGKAVNDHMNHSKKLCIGGCAKIFVDKEKVADAIFQNPDADEGLFDKAAELFGLEEGTVH
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