Scaffold Ga0233412_10000039

Overview

Basic Information

• Taxon OID: 3300023210
• Scaffold ID: Ga0233412_10000039
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 70549
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (14.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6569
  • Long. (^o): -123.4875
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021773	Metagenome / Metatranscriptome	217	Y
F027850	Metagenome / Metatranscriptome	193	Y
F039135	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233412_1000003942	F021773	GGA	MKWLRNYELFKESKTYSNKNLLSEMCISMVLLNNEFLDNILDRGLKARYSDNSQIFLTDLKNLLLAKNRLKLGKFVDNKCVVDDEISKVNGMFSDVTFDIEKDWKILVNSRIAARNIIDKLIPDEKLESDRIRNIFWVGPNKDGDYQEDIVIELTDGRQYSFFLNKNLTSSKTSSFNLFAEELIGSDLDRLFKADYLPRWDKLTQEWVRVIYENANKNIQLHIEKFIDPKRIDSMGYFEYFDIRHSDVRFKHLGEFIRDFDKNILKFQDLMTEIWKKRDICFSDPEKVYKEWTESKIVILNSKILENLLTTSLKANFAENIERMEDGFKLASGTVKMKLFKTLVEKIGCLERPLYFLGNNGNVFHMVPSREFFRENYDDLKIKFDYHVNFTVSEEEDNNDFNVKIKLELDDTTLIEMFILVKFSGGEMSGKLSAKHKFELPENFNYLISKKQLGENEE
Ga0233412_1000003944	F039135	AGG	MKYLKKYKQHKESVVVDLTFQNVEELLESLSLWHDALLNSISAEEVDIYDTFKLPNDDFADKLDLDTLSDNVEFINSLSSIALKKSELKNSEDFQTFLNKPCKFMFIFDINTNELENPIYLLFQVWNETIKKWEDVKLYKINDDVKKFYDKLTSKVIEIIDGDENYIYETSNGNEWILQNADAETDVYKKIFRREELQDLLSDRNVKVNIL
Ga0233412_1000003983	F027850	N/A	MRGFRSYNKKELFNQIDQLSIERINNQIITKYGGRVIKTANVSNRYEIFDIVKYLKDKINDIENNFTITNYQLSIKGGQQYLKLISDKIDVGGVEFYKSFYILNSSDKSRRLSFNVGLYSETSKFHVVNSSKNIGLTKKHLKGVTQAAEEATLGLNDETFDEQIKSLKSLVGHRISFSKLREVILGDKEDIPRINHLKFDAFKNSVRTTPFTGVSITKEQRTMLYTHSEDLSEVPNDKDFYLDAFWSFQVYLRIFNKQDSHIIKNETDRIMKMTQWSVRNAVLESLGI