Scaffold Ga0255811_11693803

Overview

Basic Information

• Taxon OID: 3300023207
• Scaffold ID: Ga0255811_11693803
• Source Dataset Name: Combined Assembly of Gp0238866, Gp0238878, Gp0238879
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Toronto
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2022
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location

• Location Name: University of Toronto, Toronto, Ontario, Canada
• Coordinates
  • Lat. (^o): 43.5479
  • Long. (^o): -79.6609

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037746	Metagenome / Metatranscriptome	167	N
F070633	Metagenome / Metatranscriptome	123	N
F074119	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255811_116938032	F070633	AGGA	VLDVLHSNSEEGFIYSVRQHLPLGPKRCKSNYNLVVVPLSDGIMTSIERDNFNIAMDTEGRLILTRKDRKVQLVFDYGSGFMTGVLGGVLYDTFEIPKKEETDYHG
Ga0255811_116938034	F037746	GGAGG	MPVDIEGSKTNDDVGQDFEANYIPGTTDKDLEDARELMETLLKKYGNRAALEANESDWRKYRRAMHVVASRSKDTMDAANKAREDLIKRKNLLSKFFEENTEILFKLPEWARINLRKYTDCGLLVDQEYLWQALGELGEDGLAEHLLNVANYIYLDTGFMGGVRGDSETLKRGPVRSIYSRPTCRSQKTVHPKCGCNKV
Ga0255811_116938036	F074119	GAGG	MSEIQVFEVLAKILPYLVSLGIGAFAGWELVKTKIHALAEFFKTVDEARYDDAVTEKEFRDIWEKGRALFGTGIKKGA