Scaffold Ga0255811_10175295

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255811_10175295

Scaffold Ga0255811_10175295

Overview

Basic Information
Taxon OID	3300023207 Open in IMG/M
Scaffold ID	Ga0255811_10175295 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0238866, Gp0238878, Gp0238879
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Toronto
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	774
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location Name	University of Toronto, Toronto, Ontario, Canada
Coordinates	Lat. (^o)	43.5479	Long. (^o)	-79.6609	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089552	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255811_101752952	F089552	GGAGG	MKRLCGCGGGDEPAKCGTKEQERARIVESFDVFGLGERERGELLETLDSPKWDWYRDCDGCTLVSEVYWPNKYFPPCLRHDFDWMRGKGDWAASRRFYELQRAYGIPIWRSALRSGAVTIVWYTWSRWAR

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