NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10268959

Scaffold Ga0214919_10268959


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10268959 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1204
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009604Metagenome / Metatranscriptome315Y
F023346Metagenome / Metatranscriptome210Y
F039627Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_102689591F023346N/AIIITYAKALRTIQKDQIDPYINLIEKELIKTYPELEDREDNALNWAYDILNAESNADVVETLNRLNDIIIDERKEKWKCNYCGKNTFNDDIDYLFGTNHIGCVLNEDINNREHSDPDYILDSRLRKISDIERKLDTYESELNKLHAELVHLRSDYYQESTN
Ga0214919_102689592F009604N/AMNKCGCGNDIHPERYELGYKICLPCGEQAAKRTQKYGYLHFGHKTAGSIVITSKKAFDNYTKVSYRKGKASNMAYASRLSTSF
Ga0214919_102689593F039627N/AMTASFYKTVYQRKFEELPRWKKMAIVEDSKRNNWSGLLTDFVKAVIEEAEKEYANSRSTVSNTPIEYVKDSENKSKKTIKKKS
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