Scaffold Ga0214919_10249372

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10249372
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1274
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006463	Metagenome / Metatranscriptome	372	N
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_102493722	F006463	N/A	MTSGTTYEQLDWWQRQWRGSFDLGLYLEICRIKKNEQTKFKPMKRFKATFKTWAYVGAPMKLETRIVEAYDTQHVKNLIQKNDDIIMEIKQIEK
Ga0214919_102493723	F009958	N/A	MENRNLEFWNKGWELTYEFTGWTYSIAGTWEFNDYDEVSEYAFIELEVEISQKWLTETDDNLQPHVLGVRILEDVRLEMQEAINSDLVHYNFWEWKTSNDDSNYTFYHEL
Ga0214919_102493724	F034772	N/A	MKNLIDYFTPTTEEHKSFLRHFLSTLMAFIVFGGMFYCLMYLKAL
Ga0214919_102493725	F009004	N/A	LKTMKTEFNKVIDFLETQQQENKLNTNQLHLIIQTLCTFLDDEQLKEVENLFNQFKK