NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10216811

Scaffold Ga0214919_10216811


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10216811 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1413
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011488Metagenome / Metatranscriptome290Y
F058996Metagenome / Metatranscriptome134Y
F099314Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_102168111F058996N/ATNVITPMWHNCQSILKSGDLELADNKLMEFVWKLADYTMEGFKDADVIEGVKLETWKERVWFAIENAGLLPE
Ga0214919_102168113F099314GGAMSEKRGLTGKLLYDFNTAKAVYIKNQNGKFVRVTERDFRSYNGERFIFEKVNDEYQYTPYEGPIYFHNTNRKCKQPVGEGKIQYMVNKPWVSVRRPHERYLED
Ga0214919_102168114F011488GAGGMSMTNEELIEELYHKAHAKGFFHELHEKVKQVKQSGIKECEHRLVQRAYSELKKLKLAQPTAQN
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