Scaffold Ga0214919_10176009

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10176009
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1649
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F003067	Metagenome / Metatranscriptome	509	Y
F012572	Metagenome	279	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_101760092	F012572	AGG	MSDQYELINLQAMTGKLFIDGELAAEYKVEQCDKCAMVTQLDKFGYQKNSFENIIWFCKGCR
Ga0214919_101760095	F003067	AGG	MSQAQSFIALAVGIAALGGTMAGLVRHLVKYYLAELKPDGNGGHNLRGRVDRIEQRVDKIYEMLLEDRLAK
Ga0214919_101760096	F002269	N/A	MNKKTITAALYSYGRAALASVAALYMSGITDPKVLANALVASLIAPILKGVDPKEKQFGLGAK