Scaffold Ga0214919_10152288

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10152288
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1832
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002092	Metagenome / Metatranscriptome	594	Y
F010320	Metagenome / Metatranscriptome	305	Y
F059953	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_101522882	F002092	N/A	MRTTNQKAIEYLNGNPIVANFINKLNIQRKDYYVKADMVSQWKELTVEIGNKFIRLWDGTGCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYGIYGPEYL
Ga0214919_101522883	F059953	N/A	MELVKELKELKNKIKYMNLELTLMELNDLYYVVSKGVESHKELVKIAKRTTPELEKYFDKELSKSVQLLDKIQTVLHNEYQVMDDEPEYDSAGFTEDDRMQEVKSEKKLFTLNNDR
Ga0214919_101522885	F010320	N/A	MNYYQIVAFAQQLKKENMKTNNDAFINDAYNEESKLHIEFMDEVKTHDYSYMMSDDDRVYSRGRNNEKQIQEKLHALIAICRYDGHDLLDEVISLVPQQYNDVDEYGNDLTHRVIRGWFKPYVFDNFKL