NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10119824

Scaffold Ga0214919_10119824


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10119824 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2177
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006260Metagenome / Metatranscriptome377Y
F009135Metagenome / Metatranscriptome322Y
F013524Metagenome / Metatranscriptome270Y
F019476Metagenome / Metatranscriptome229N
F024047Metagenome / Metatranscriptome207N
F042296Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_101198241F042296N/AMNLFKRVIKWCGVIVYATFLATIAYAATMPEPIKLYVIYTYKFNERVIEKIYMKKENAQKYCDTYKDSHNYTFEELTISE
Ga0214919_101198242F013524N/AMKTNKIVIDRLREFTQKNCNTTLDPKLCEDIRYLCDEVERFSREIVKANDHMDEDFITIQRYKNKLERCETKLSNYEPF
Ga0214919_101198243F009135N/AMSNPKYYLTVNLPPNFDEVDAEAIKTDLMAYINSKNQYGAMYGPKSHKKGITVDKVIYRTNED
Ga0214919_101198245F024047GGAMTNVKKSDIVDWLKNVVETQMVKELNVPNAKVYLSCDRPHPDVILESKNADGDLQIVRFLII
Ga0214919_101198246F019476GAGGMIENKLKSARVVLDIEWECVDDSDLPSLWDWKRIKMPMDLTKVKYVGIQTPNGPENVSNWMGN
Ga0214919_101198247F006260N/AMYTSNMEVELTIKDKVTNPVIIQHDDLKFDGKTITIPGYYVGVLLEYVKDYKLDGVPQVDIEDYKMFRNFLLDIEEYKNRGN
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