Scaffold Ga0214919_10109038

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10109038
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2328
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015581	Metagenome / Metatranscriptome	253	Y
F024308	Metagenome / Metatranscriptome	206	N
F024548	Metagenome / Metatranscriptome	205	Y
F044443	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_101090382	F044443	N/A	MLNRIIEQFKYKLYTALSYLTVVFFIYFIIANVVFAFRHPWATDMEKLIHIGDALMFNKVSYKEMRGEYEER
Ga0214919_101090383	F024548	AGGAG	MKSADNVVELSESDLKKYTKLKEGTKFEVGDFVNVYDNTYAKISKGSKLCKENVNKYNTVLRLK
Ga0214919_101090386	F015581	N/A	MSEINKPNAFVFKAYIDGEYRLCVCPRINNKWSEADIVYVKDDPYKEFDEVLDTKLFSVVFVGYTPDESGIGFNIKNVNSQYLKSDTSIASEMYANNSFFETIEQGYQLFYEQSERQGEQTQTSEQENL
Ga0214919_101090387	F024308	N/A	VKKVILSKVEYEFLVECLEKLEKQADNSLADTKWSEKLDTTQRLYELEMEYFNIKKYGVPSTKYDMVRWLLTKVKNKTLDF