Scaffold Ga0214919_10096510

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10096510
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2536
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006181	Metagenome / Metatranscriptome	379	Y
F012446	Metagenome / Metatranscriptome	280	N
F015582	Metagenome / Metatranscriptome	253	Y
F082581	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100965104	F015582	N/A	MNTNINPELEAEQTEDAKYLEELNHYVSTLSAPSAESVALYRSKLSMLEDIHAEIRTKYPDFMPDYDAAKDEHITADPKYLDSTYSFSSRDLRSSSNS
Ga0214919_100965105	F012446	N/A	MKKLQKEFTGNYDKVGMNKFVQIKKENNVAIYQRFNTDGTPRSYEVFIVKVVPKGAPLPNGKVVEESYEQYPGANAFGKTAYDCRTIGQAEERFDQLVIKAKDSAEAKEEAAKTGVRNRGRRGTSNKIKLDMTLNKGTKFTAKFLMSVLGVSQPVLFPILKQWEKEGTIKVNGSVKGEGKGRPATEYIVV
Ga0214919_100965106	F082581	N/A	MNNVSNDSNMNSTSTKTSKAGRPAKNLKLILNKSFTLKDLQTLNPDVKAVTIRAAVLRGLSNGKYTKLPRNVQTGRKGKPANIFINSKVYKANLANLAKSKAVVTVTAEVVTETVTA
Ga0214919_100965107	F006181	N/A	MKKNLIHVIYPDEAVNSFVRTTDMSTADILERVFAEWNHGSGMECEMFVKSKKRSLCVNDIVCVNGVYFQCASFGWNQVSPEYVIDLENEVSAHPSRTEGAWFALSDVMWERNKKRSLVV