NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10085155

Scaffold Ga0214919_10085155


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10085155 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2769
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002269Metagenome / Metatranscriptome576Y
F003067Metagenome / Metatranscriptome509Y
F012572Metagenome279N
F020906Metagenome221Y
F046904Metagenome150N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100851552F020906AGGAMPTSAQVSVGTTATVLVDATGFDQTVWLHNSGGGVVYIGAANVSTTNGYKLDNGDKMELPVGDNEGLYGVTASGTNTVCVLKQIN
Ga0214919_100851553F002269AGGAGMNKKAITAALYSYGRAALASVAALYMSGITDPKVLANALVASLIAPILKGIDPKEKQYGLGAK
Ga0214919_100851554F003067AGGMNQAQSYIALLLGIATLSGFMAGLVRHLVKYYLAELKPDGNGGHNLRGRVDRIEQRVDKIYEMLLEDRLAK
Ga0214919_100851555F046904AGGMNSLDLIVVGMVALFMGLFIYAAYEMGYKVGLGEGYLRGRNIAKALRESEASK
Ga0214919_100851557F012572AGGMSDQYELINLQAMTGKLFIDGELAAEYKVEQCDKCAMVTQLDKFGYQKNSYENIIWFCKGCR

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