Basic Information | |
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Taxon OID | 3300023184 Open in IMG/M |
Scaffold ID | Ga0214919_10085155 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2769 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002269 | Metagenome / Metatranscriptome | 576 | Y |
F003067 | Metagenome / Metatranscriptome | 509 | Y |
F012572 | Metagenome | 279 | N |
F020906 | Metagenome | 221 | Y |
F046904 | Metagenome | 150 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214919_100851552 | F020906 | AGGA | MPTSAQVSVGTTATVLVDATGFDQTVWLHNSGGGVVYIGAANVSTTNGYKLDNGDKMELPVGDNEGLYGVTASGTNTVCVLKQIN |
Ga0214919_100851553 | F002269 | AGGAG | MNKKAITAALYSYGRAALASVAALYMSGITDPKVLANALVASLIAPILKGIDPKEKQYGLGAK |
Ga0214919_100851554 | F003067 | AGG | MNQAQSYIALLLGIATLSGFMAGLVRHLVKYYLAELKPDGNGGHNLRGRVDRIEQRVDKIYEMLLEDRLAK |
Ga0214919_100851555 | F046904 | AGG | MNSLDLIVVGMVALFMGLFIYAAYEMGYKVGLGEGYLRGRNIAKALRESEASK |
Ga0214919_100851557 | F012572 | AGG | MSDQYELINLQAMTGKLFIDGELAAEYKVEQCDKCAMVTQLDKFGYQKNSYENIIWFCKGCR |
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