Scaffold Ga0214919_10085155

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10085155
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2769
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F003067	Metagenome / Metatranscriptome	509	Y
F012572	Metagenome	279	N
F020906	Metagenome	221	Y
F046904	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100851552	F020906	AGGA	MPTSAQVSVGTTATVLVDATGFDQTVWLHNSGGGVVYIGAANVSTTNGYKLDNGDKMELPVGDNEGLYGVTASGTNTVCVLKQIN
Ga0214919_100851553	F002269	AGGAG	MNKKAITAALYSYGRAALASVAALYMSGITDPKVLANALVASLIAPILKGIDPKEKQYGLGAK
Ga0214919_100851554	F003067	AGG	MNQAQSYIALLLGIATLSGFMAGLVRHLVKYYLAELKPDGNGGHNLRGRVDRIEQRVDKIYEMLLEDRLAK
Ga0214919_100851555	F046904	AGG	MNSLDLIVVGMVALFMGLFIYAAYEMGYKVGLGEGYLRGRNIAKALRESEASK
Ga0214919_100851557	F012572	AGG	MSDQYELINLQAMTGKLFIDGELAAEYKVEQCDKCAMVTQLDKFGYQKNSYENIIWFCKGCR