Scaffold Ga0214919_10077380

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10077380
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2959
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011394	Metagenome / Metatranscriptome	291	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100773802	F011394	AGGA	MFIDKNKDHFKYGINEWTGEPNKPVFYTKEMAKKVRELKSPASNLEMDIVKYPEFLAIRLYENNFSQYDGSMRVRVIEYIEMVKNILESYGVRVELEGKPGGKNHG
Ga0214919_100773803	F072349	AGGAGG	MDKVLCYSCNKSKNELANKKSALLPVNLLLCKSCTENKLEPRWIIILAGRQYGSEHVKEYIAKKKYVGLDITASELLI
Ga0214919_100773804	F105192	N/A	MNISLTQVLITLFAASISGLFTAQINSRKSRKEKLVQEADKAHDQLLLEIKDLQIKLYKLEKDLNEWKDKYFEAVQELIRVKAELEGTMLKLTHIEMHSDED