NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10069783

Scaffold Ga0214919_10069783


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10069783 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3181
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013759Metagenome / Metatranscriptome268Y
F017826Metagenome / Metatranscriptome238Y
F019136Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100697835F013759N/AMKLEFGLSVFSRSETLLGLEITTHNGITANEDALYRERIVEFSIGIIFAIFTIGFVSKGEKIDTPEMDNVQRAMKAFESEMDKH
Ga0214919_100697837F017826N/AMEKLKRVWNLVLVPTAFFLGALNMWIGETAVGCMFILFATNETINNDKQIR
Ga0214919_100697839F019136N/AMSLTIKNYKKLEGWAHNYKDLRIGEVTETQTEYSFRVAYNAAPYTIKIFRQGTSTVEYEMVLRDGADITQYGREWVAGRKLKSLELTALIFEALIVKFKPKAQTQMNNNINYFPF
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