Scaffold Ga0214919_10067122

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10067122
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3271
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005293	Metagenome / Metatranscriptome	405	Y
F019614	Metagenome / Metatranscriptome	228	N
F040616	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100671222	F019614	AGGA	MNVASIASNKIQVEFSAMPGDNREFLTFSVPNGWDDVKKLTNKVLTYNNKDFTFSGWNSDRNECYFVRLVNGPSFVASIR
Ga0214919_100671224	F040616	N/A	MIDPEDIAYEDRVTGDAYSYTGDGSGEDDLADYNQNEAGDYCNE
Ga0214919_100671227	F005293	N/A	MNVDSVPFIPTRDDLIGFISDTYKEINGFRPRPNWSELTYNQLDQWGQQLSAEVVAYRKQEVVRNRIARGLRRAQQRAWVEKKRGYFTPEPITLGNVVNF